Showing posts with label Genetics. Show all posts
Showing posts with label Genetics. Show all posts

Monday, May 9, 2011

Some thoughts on Canonical Pedigrees

One of my colleagues is working on the HL7 Canonical Pedigree Project.  The point of this project is to develop reference content that could be used to test various representations of the pedigree.

One of the interesting challenges in Pedigree representation is being able to look the genetic information from the perspective of different probands.  Being able to look at a genetic history from different perspectives allows for a variety of different techniques to be used for analysis.

In order to represent the family tree, the HL7 Pedigree model allows for two persons to be represented with a coded relationship between them.  The coded relationship comes from the HL7 Family Relationship Role Type vocabulary.  The essential model is that the patient is related to (at least) one other person, who could in turn be related to other persons, et cetera.

There is no requirement for the "pedigree" graph produced to use any specific relationship (e.g., parent, sibling, spouse), unlike what would be found in a "historical pedigree" such as this one.  The vocabulary allows for exact (natural mother) and inexact (mother) relationships to be represented. Transforming when this sort of vocabulary is used to represent relationships, changing the viewpoint from one subject to another can be challenging.

I argued with my colleague that any canonical representation of a pedigree needs to also include a canonical representation of the relationships, and that the current vocabulary doesn't help at all, since it has a focal point that isn't really reversible.  Changing the proband requires changing the direction of relationships and associated vocabulary.

23 and me has a great video describing the cousin relationship which helped me work through some of this.  If you want to whether someone is your Nth cousin, and at how many removes they are, there's a simple answer.  Cousins share a common grandparent (or great-grandparent, et cetera), but not common parents (that would be sibling, nephew, aunt, et cetera).  To find the degree, count the number of greats between both parties to their common grandparent.  Take the largest number and add one.  If you and I share a common grand-parent, then the number of greats for both of us is 0, to which I add one, and discover we are first cousins.  Now, if it's my grandparent, but your great-grandparent.  To find the number removed, you are looking at the difference in generations.  Simply take the difference in the "great" count.


The unifying principal that I worked out is this:
In order to canonically represent relationships, you must only represent those between ancestors and their offspring.  You can take it in either direction, dealing with "begat" or "was begatted by" as the preferred direction.

In the canonical form, then, you wouldn't need to represent the "cousin" relationship directly.  Instead, you'd relate the two subject to their common *-grandparent.

We can construct a vocabulary to do that.  Just use F to represent natural father, and M to represent natural mother.  FF becomes my father's father, and FM my father's mother.  The vocabulary can be modified to be more concise.  Whenever F or M repeats, just put the repeat count following it.  FF could be represented as F2.

To deal with ambiguity of the ancestry (if X is my first cousin, is it through my father's or mother's side), we could simply use P to represent parent.  So, if X is my first cousin, we have a common grandparent, Y.  X is related to Y by P2, and I'm related to Y by P2.  If you don't know how far back the relationship goes, you could use the + operator.  My cousin (first, second, third or more) and I would be related to a common ancestor Y using P+.

The nice thing about using this form for a canonical relationship is that it doesn't matter who the proband is, the set of relationships that are in the pedigree don't have to be modified when the subject changes.


While this would seem to capture almost everything needed in a pedigree, there's one genetic relationship that isn't expressed.  See if you can discover which one.  The answer is in comments below.

Wednesday, November 18, 2009

Breast Cancer Screening

Recent news discusses the controversy over new recommendations on breast cancer screenings. While the headlines focus on the changed recommendations, I’d rather pay attention to how interoperability healthcare IT can help to identify the at risk patients and enable them to receive the necessary care. I’ve asked my colleague Scott Bolte to cover the details for us, since this is one of his areas of both expertise and passion. Here's Scott on the topic:
Everyone hates feeling helpless and wants to be able control their life.  Rarely is that more true
then when facing cancer, or trying to avoid cancer in the first place. It isn’t surprising then, that changes in breast cancer screening recommendations have provoked passionate debate by clinicians, clinical associations, patient advocacy groups, and patients themselves.

Earlier this week the US Preventative Services Task Force (USPSTF) changed the recommended age for routine screening for breast cancer from age 40 to 50. There were other changes too, but that's the most dramatic one.  The USPSTF is the premier body in the United States for screening recommendations.  It greatly influences clinical practice and reimbursement guidelines.  However, their recommendation for change is not accepted by other authoritative organizations like the American Cancer Society (ACS).

I will not second-guess either the USPSTF or the ACS.  What I will do is point out that these recommendations are for large groups of individuals with average risk. If you go beyond the headlines, you will find that the USPSTF guidelines still explicitly recognize some people have a genetic predisposition to develop cancer and that the new guidelines do not apply to them.


Most people have heard of “cancer genes” like BRCA1 and BRCA2. Actually, everyone has the BRCA1 and BRCA2 genes. All genes naturally come in a variety of forms called alleles.  Some alleles are harmless.  They lead to no measurable difference, or differences in cosmetic features like the color of your eyes. Other alleles are more significant, determining how your body processes drugs for example. But the alleles that we're worried about here are for BRCA1/2 genes and how that changes the chance that you develop a disease like breast cancer.

The BRCA1/2 genes tend to dominate discussions about breast cancer, but they account for less than 10% of breast cancers.  Just because someone has breast cancer, even at an early age, they may not have a genetic predisposition.  There are effective tools to identify risks of developing breast cancer, and one of the most useful is a detailed family history.

The advantage of a family history is it reflects both genetics and environment. It can capture factors such as where you live - with corresponding exposure to environmental pollutions, the family dinner table, exercise habits, and other components that increase or decrease risk. It is the interplay of genetics and environment that ultimately determine if you develop cancer.

If the new guidelines leave you feeling exposed, especially if you have a sister or aunt who has had breast cancer, I strongly recommend you assemble a detailed family history. Use a free web tools such as My Family Health Portrait from the US Surgeon General to survey not just breast cancer, but all other cancers since they are often interrelated. That will capture not only the extent of all cancers in your family, it will also collect critical details like maternal vs. paternal relations, and the age of onset of the disease.

With the family history in hand, you and a trusted clinician can determine if additional genetic testing is appropriate. Whether it is or not, the open conversation about clinical risk - in the context of your personal tolerance for more or less testing - will determine if the new USPSTF guidelines are appropriate for you. Having an ongoing dialog with the clinician, and trusting them when they determine if your risk is high, low, or average, puts you back in control.
To follow up on Scott's posting, I'll add that in 2008, ANSI/HITSP developed the IS08 Personalized Healthcare Interoperability Specification for the communication of detailed family histories in response to the the Personalized Healthcare Use Case. This specification includes the necessary detail for communicating these family histories in a wide variety of clinical documents. Healthcare providers with access to this information can thus readily identify patients who are at high risk, and act accordingly.

Monday, July 14, 2008

Reporting Genetic Test Results

This is the second part of a three part series that started with Understanding Genetics. In this article, I will identify, and describe at a high level the standards that are needed to obtain genetic test results.

But first a little segue. A colleague reminded me recently that what helps us best to deliver is in having a real understanding of the why our customer needs something. Let's see if we can create a little fantasy that might help.

Imagine that you are in Tier 3 technical support at your company. Assume for the time being that all of your company's computers (and those of companies like yours) are the same; it's just the software that's different. A new technique in computer diagnostic now allows technicians like you to actually read the stored programs inside the computer (work with me here). A few years ago, your company and hundreds of others like it came together to work on a major project. They took one of the computers at random, and cataloged every bit in its memory, all 750 megabytes of it. Within this vast amount of data were somewhere between 65 and 80 thousand little subprograms, each of them anywhere from 10 to 15 thousand microinstructions in length. We know only a little bit about how the processor works. We can understand start and stop instructions, and can interpret some of the sequences of microinstructions that make up larger operational instructions, and have some basic understanding of some of these programs, but are still learning more every day.

Your job, given a particular computer malfunction, is this: Based on a particular set of symptoms, and other random information that comes your way about where the computer has been, and what subsystems it was built from, you need to:

  1. obtain any additional necessary information you need to do a good job from your customer, then
  2. identify the particular memory region inside the computer to look at,
  3. locate the instructions at that location
  4. determine whether these instructions are correct, and if not,
  5. whether or not they could be the cause of the given symptoms.

Just to complicate matters, the computer that was selected at random is known to have a few wonky sub-programs installed on it that aren't quite right either. Also, addressing a particular memory location is not an exact science. It's more an art form, and the ways that you access it is by looking for sequences that you know typically precedes or follows the particular memory address you want. It's more like associative memory rather than RAM.

By the way, you have a budget to work with. You can read out vast sections of memory, but it is very expensive (like disassembly), or you can look for known problem causing sequences (like a virus scanner), which is faster and cheaper, but doesn't find everything.

Add to this that the information you have to work with and understand to identify a problem is not only growing at tremendous rates (see the second paragraph in Clinical Decision Support
), but also being changed. What you knew yesterday might be different tomorrow. It may be that one of those wonky subprograms has now been replaced by a better sample.

This is just a small sample of the complexity that faces the clinical geneticist. Hopefully this little segue into an analogical fantasy might help you understand a little bit about how genetic testing works.

Now, back in the real world, we will start simple. A genetic test is, at its core, a laboratory test. This simplifies matters for us, because we can make use of the same standards used in ordering and reporting for laboratory tests. The most commonly used standard for ordering laboratory tests and reporting on results is HL7 Version 2. There are many different releases of HL7 Version 2 (we could call them variants, but that would just be too confusing), including 2.2, 2.3, 2.3.1, 2.4, 2.5, 2.5.1 and 2.6, and coming soon Version 2.7 (it isn't clear whether these would be alleles or mutations).

Various organizations have selected different releases of HL7 Version 2 messages for laboratory orders and results, including:

HL7 Version 2.4
Used in the original ELINCS implementation guide developed initially by the California Healthcare Foundation. This guide is now being completed by HL7 using HL7 Version 2.5.1

HL7 Version 2.5
Used in the Laboratory Technical framework from Integrating the Healthcare Enterprise,

HL7 Version 2.5.1
Selected by ANSI/HITSP, and recognized by Secretary Leavitt of Health and Human Services for use in the US for reporting laboratory results. ANSI/HITSP selected this version because it supports the conveyance of information required by CLIA regulations.

While HL7 Version 3 does support laboratory tests orders and results, this is still a work in progress.

HL7 CDA Release 2.0 (this is another gene altogether) has also been selected by ANSI/HITP and recognized by Secretary Leavitt for reporting laboratory results in a clinical document. ANSI/HITSP's selection of this standard is constrained by the IHE XD-LAB profile found in the IHE Laboratory Technical Framework. The XD-LAB integration profile also conforms to the HL7 Laboratory Claims Attachments Implementation Guide.

Finally, results reported in a laboratory result often use Logical Observation Identifiers and Codes or LOINC® to identify results (all of the examples above use LOINC).

Ordering the Test
While our focus is on the reporting of genetic test results, the process has to start first with the order, otherwise there would be nothing to report on. This is a fairly complex process, which can involve quite a bit of negotiation (this is a requirements gathering process).

Sequencing and genotyping tests are performed using different methods, have different sensitivity and specificity and different costs. More powerful tests are typically more expensive. A typical genetic test can cost hundreds or even several thousand dollars, and take weeks to obtain results, so selecting the right test is important. Reflex testing (running another test when an ordered test shows a particular kind of result) also needs to be considered. Sometimes it is sufficient to order the cheaper test first, and then, if necessary, perform the more expensive one.
Reason for the Test
Ordering the test starts with providing the reason for it. This helps the lab determine what type of test or tests need to be performed and what kind of results need to be returned. It isn't sufficient for the laboratory to just identify a gene sequence. The sequence has clinical ramifications that they need to report to the provider. Remember, understanding the why is important.


Sequencing or re-sequencing, refers to the reading off the nucleotides (A, C, G and T) of the gene sequence directly. This is usually more expensive, but also the most accurate way to obtain a gene sequence. Some researchers use the term re-sequencing, because the Human genome has been sequenced once already.

Genotyping uses a set of probes to identify clinically meaningful variants in the patient’s DNA sample. It is a less expensive technique to produce results. This technique may not have the same power as sequencing, but is often effective, especially when specific variants are well known.

Sequencing is used if identification of novel variants is warranted, because genotyping is limed to the set of variants identifiable by the genotyping probes.

Please note: Genetic technology advances rapidly. Next year, the statements about cost may no longer be true. Search the web for "$1000 genome".


Clinical Question
So, in looking at why, what are the questions that are typically being asked? In genetic testing, there are six common clinical questions\. Half of these are related to specific genetically related diseases, and the other half to medications used for treatment. The "question" being asked by the clinician needs to be described in the order.
Tests on Genetic Conditions
Tests that identify variants associated with genetic conditions can assist the provider in determining if a patient:

  • has a genetic condition,
  • is at (increased) risk of contracting a genetically related disease, or
  • carries a particular genetic variant and can potentially pass it onto their children.

Each of these "questions" needs to be described, and the disease being assessed needed to be identified in both the order and the result.

Tests on Medications
Pharmacogenomic tests can tell a provider:

  • Whether a particular medication will be effective or not in treatment,
  • How quickly particular medication will be metabolized by the patient, or
  • How toxic a medication may be to the patient.

LOINC Vocabulary terms have been proposed to represent each of these different kinds of tests results in panels. The SNOMED CT and RxNORM terminologies have been proposed to represent disease conditions and medications respectively. Some experts have noted that SNOMED CT does not provide great coverage for family related disease (i.e. genetic conditions) but feel that it is more important to use a common reference vocabulary, than it is to introduce vocabularies that are not yet used in healthcare. Use of these vocabularies will enable linkage of genetic data with other clinical data in the health record. I find myself in agreement with them.

Describing the Specimen
The specimen is the source of the DNA examined, as well as eventual source of the variant identified. Genetic material in a tumor specimens can have somatic or germline variations. A somatic variation occurs after cells have been formed, for example from UV damage to skin cells after too much sun exposure. A majority of cancers occur due to somatic changes. A germline variation is one that is incorporated into every cell. The last classification is for specimens of fetal tissue (prenatal). Identifying results based on these three categories. A proposed classification system for specimens uses the terms somatic, germline, or prenatal to describe the specimen.

Reporting the results
When reporting on the results of genetic tests, it is important to include the information in the report necessary for a healthcare provider in interpreting this information. The first step in reporting the results is to repeat everything in the order that was stated or clarified later during the ordering process. The reason for this is to allow subsequent reviewers of the result to understand the original intent of the provider ordering the test. Ordering a genetic test may be an iterative process. In reporting the test results it should be necessary only to report what was finally agreed upon.

Region of Interest
Once a genetic test is selected, the testing laboratory can specify more detail about the region of the gene that was examined. The human genome includes on the order of 3 billion base pairs (which fits into about 750 mb). At present, it isn't practical to sequence a single person's gene, and would take quite a long time (although that may change).

So, the testing laboratory determines where on the genome the test will focus. This region of interest can be described by identifying the genomic or transcriptional reference sequence (to align the region with the genome), the starting and ending nucleotides in the sequence (using the numeric portion of HGVS nomenclature), and a specific gene using the HGNC nomenclature (remember that "associative memory access", here it is). Much of this information is, or can be tied together in appropriate knowledge bases (and these are continuously being updated).

Interpretation
The next step is to report the interpretation. Each test types described in the previous sections above will require different values to interpret the results. Vocabulary has also been proposed in LOINC using LOINC Answer Codes, but the LOINC documentation does not presently describe how to relate LOINC Answer codes to the supplied data. Certainly any set of values used for these interpretations will also need to be mapped into SNOMED CT, to allow for their eventual use in clinical decision support systems that rely on SNOMED CT. Note that some interpretations will remain "inconclusive" (have you ever finished a technical support call only to get no solution to your problem).

Details
Because sequencing and genotyping is so expensive, it shouldn't be repeated unnecessarily. That means that enough detailed information should be conveyed in the result that future re-interpretation is possible. The average gene can contains from 10 to 15 thousand base pairs (think of these as the microinstructions), but this can vary dramatically, with some genes using millions of base pairs. This information is maintained by the testing laboratory and is absolutely essential in the initial interpretation of the results. When reported, these findings are summarized using the recommended standards. This will enable linkage of the genetic data to clinical genetic knowledgebases, so that interpretations can be maintained in a manner similar to other laboratory tests.

Different kinds of tests will require differing detailed results. A test that is attempting to identify a particular DNA marker or allele will need to describe what was found. Again, this identification can be performed using HGNC to describe the gene, NCBI Nucleotide Reference sequence identifiers, and HGVS nomenclature to describe the variations.

Analysis
Details are not sufficient. The final component of the report should include interpretation of the results performed by a geneticist. Genetics is so complex that providers will need that expertise to understand the results. This analysis may include references to research, educational materials, suggested treatments or additional testing.

The Final Step
For most clinical uses, once the provider's question about the patient's genetics is answered, many more questions are asked by the provider and by the patient. Some of these involve how to communicate the information to the patient and/or their relatives; others involve what the next steps should be in management of the patient's health. These fall outside of the domain of Healthcare Standards, so I will not dwell upon them. However, The American Society of Clinical Oncology published a policy statement that addresses some of these issues. I recommend reading it.

References:
American Society of Clinical Oncology Policy Statement Update: Genetic Testing for Cancer Susceptibility, Journal of Clinical Oncology, Vol 21, No 12 (Jun 15), 2003: pp 2397-2406 available on the web from http://jco.ascopubs.org/cgi/reprint/21/12/2397
This is an excellent article that describes many of the issues surrounding the need for, and appropriate use of genetic testing. While its principle audience is clinical oncologists, the explanations given for the ASCO positions are very clear, and address many issues that need to be considered with respect to genetic testing.

Acknowledgements
Thanks to Sandy Aronson, Director of IT, and Mollie Ullman-Cullere, both of HPCGG for arranging a tour of their genetic testing laboratory and answering my many questions on genetic testing. Thanks also to Mollie, and to Scott Bolte of GE Healthcare for their reviews of an early draft of this article. Accuracy is due to them, any errors are of course my own.


Monday, July 7, 2008

Understanding Genetics

You can't do anything about your genetic background or your family history, but you can do something about the medicine you put in your mouth.
-- Dr. Andrew Glass of the Center for Health Research in Portland

My interest in genetics and family history started with the development of the Family History section of the HL7 Continuity of Care Document. It was recently expanded by the introduction of the Personalized Healthcare use case into the 2008 work cycle for ANSI/HITSP. We are all fairly well aware by now that increasing a provider's knowledge of a patient's genetics and family history will allow them to better select effective management. Over the course of the last six months, many of us have been getting a crash course in genetics, genomics and genetic testing, and the need for structured family histories. What follows below is what I have learned over the last six months about genetics. Given that this material is as new to me as it is to you, I've had this material reviewed by an expert for accuracy.

This is the first part of a three part series on Genetics and Family History, describing enough genetics for healthcare IT implementers that need to review and/or implement specifications produced by ANSI/HITSP for the Personalized Healthcare use case.

Part 1: Understanding Genetics follows below.

Part 2: Reporting Genetic Results will describe the standards needed to exchange the information described in Part 1.

Part 3: Family History and Risk Assessment will describe the necessary information to communicate in family histories, and the importance of this information in assessing risk, and determining the need for genetic testing or additional treatment.

Understanding Genetics
Genomic and family history data is an excellent source of information on health risks for a variety of conditions, both chronic and acute. By using family history or genetic testing to identify patients at high risk, the medical system is better able to predict the risk of disease, allowing patients and providers to make better care plans to address those risks, and ensure earlier detection and better preventative efforts.

Genetic information can also help predict how effective a medication will be, providing for better care by reducing side effects, avoiding toxicity and unnecessary therapies.

However, before we can begin to incorporate genetic testing data into EHR systems, we need to understand enough clinical genomics to correctly incorporate these results into healthcare IT systems.

I'm certain that most of you understand what DNA and chromosomes are, and that most humans have 22 pairs of chromosomes plus a pair of sex chromosomes (XX for females or XY for males) Half (23 chromosomes) come from each parent, for 46 altogether. However, there is a great deal of specialized vocabulary that goes beyond chromosomes that we all need to understand. I've translated this very specialized vocabulary into language that engineers can understand (recall that I consider myself to be in this category).

Most of you recognize a picture of a chromosome as a vaguely X shaped object. You can think of this as two identical lengths or strands of rope called chromatids (1). These strands are effectively tied in a knot together at the middle called the centromere (2). The strands at what is usually depicted in the top part of the chromosome are the short arms (3) and those at the bottom are the long arms (4).

Genes and Nucleotides
Along each arm are sequences of nucleotides, typically represented using the letters A, C, G and T making up the DNA. DNA and RNA are known as nucleic acids because they are made up of nucleotides. A gene is a distinct DNA sequence that provides instructions for producing a single protein that in turn produces a single trait, such as eye color (actually, there are several genes controlling eye color, and a single protein can cause multiple effects, but let’s keep it simple for the moment. The set of genes belonging to a person make up their genotype. A person normally has 2 full sets of genes, one from each set of chromosomes (Thus one set from each parent)

Alleles and Genotypes
Genes can have variations, known as alleles. Two commonly known alleles are for eye color, the brown and blue allele. Just because you have an allele for blue eye color in the gene controlling color, doesn't mean your eyes are blue. You might also have the allele for brown eyes in your second copy of that gene. That means that your eyes will be brown, because the brown allele is dominant and the blue allele is recessive. A dominant allele will be expressed when there is only one copy, whereas a recessive allele will be expressed only when it is present in both copies of the gene controlling that trait. There are other variations besides the most commonly know dominant and recessive, but we probably don't need to go into that level of detail. In the previous example, your genotype would be Blue/Brown, indicating that you have the alleles for blue eyes and for brown eyes in the gene controlling eye color.

Phenotype
The fact that you have brown eyes is known as your phenotype (for eye color), and basically amounts to which alleles in your genotype are being expressed. Other alleles can affect how the body metabolizes (or fails to metabolize) a particular drug, or increases or decreases the risk of a particular disease. Having a particular allele doesn't necessarily mean that you will have a particular disease or react to a particular treatment in a certain way.

Haplotype/Haplogroup
Sometimes, more than one gene in a group of closely linked genes tends to be inherited as a group, also known as a haplotype, or haplogroup.

HUGO and Gene Names
Most (if not all) genes relevant in genetic testing have already been identified as to their clinical significance. These genes will have a name and identifier issued by the Human Genome Organization, otherwise known as HUGO. HUGO maintains a database of names for genes known as the HGNC (Human Gene Nomenclature Committee) Database. These identifiers are the codes in the ontology of human genes.

Locus
Each gene occurs in particular locations on the chromosome, known as its locus, or in some cases, the gene may have multiple loci. Geneticists have special methods to represent loci. This basically involves recording the distance up (or down) the strand of DNA in the chromosome.

Mutations and Polymorphism
Something that is polymorphic has more than one (poly) form (morph). Many genes are polymorphic. Each form of a gene is known an allele, as I previously described above. Alleles that are common in the population are known as polymorphisms.

A genetic mutation is a permanent alteration in the form of a gene. Some of these alterations are detrimental, and others are advantageous, but many have no significant impact on the organism. A polymorphism is a variation that occurs in more than 1% of the population that does not cause disease. We tend to thnk of mutations as detrimental.

Mutations can be caused many different ways, including exposure to radiation or mutagenic chemicals, or simple accidents during replication. Mutations cannot be passed to offspring unless they occur in reproductive (sperm and egg) cells. It's unlikely that exposure to radiation or chemicals would ever cause a mutation like Spiderman or the Incredible Hulk, but it does make for fun reading.

Describing Genetic Variation
Just as you can "diff" two pieces of source code and build a script to turn one into another, you can also compare two gene sequences to each other, and explain how one differs from the other. In clinical genomics, these "edit scripts" also have a standard form, and can be used to describe a particular alteration that hasn't previously been identified. A nomenclature for describing these alterations has been recommended by the Human Gene Variation Society (HGVS) and can be found here: http://www.hgvs.org/mutnomen/recs-DNA.html. The use of a standardized nomenclature for describing gene alterations allows for subsequent review and analysis when new genetic research results become available.

Gene Sequences and DNA Markers
In order to identify genes and their alleles and polymorphisms we need sequences of nucleotides (A, C, G and T) to reference, known as DNA Markers. A collection of reference sequences has been put together in the GenBank® database maintained by the National Center for Biotechnology Information (NCBI).

SNP
Different kinds of polymorphisms have different names. The simplest is the change of a single nucleotide from one type to another, known as a SNP (for single nucleotide polymorphism), and pronounced "snip". These changes tend to occur in the DNA between genes, in areas that that are not functional. They are useful as DNA markers, identifying individuals or related individuals. NCBI maintains a database of SNPs known as dbSNP.

Resources:
Talking Glossary of Genetics, National Human Genome Research Institute, January 1999, available on the web at http://www.genome.gov/glossary.cfm
This is an excellent resource containing simple definitions of genetic terms, and a number of freely available images, including the two used in this article. The chromosome image was modified for this article.

Acknowlegements:
Thanks to Dr. Kevin Hughes of Massachusetts General Hospital for his review an comments on an early draft of this article, and to Scott Bolte (also of GE Healthcare) and Mollie Ullman-Cullere of Partners Healthcare for educating me and providing excellent reference material for this series.